PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023621
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 539aa    MW: 61420.8 Da    PI: 5.8697
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023621genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS275.12.1e-841355192374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svs.elykalppsetsekn...sseelaalklfsevsPilkfs 94 
                   e Ll++Ae v +++++ a alL+    ++s++g+p+qRl ++f +AL+ r++r ++  e+++  p s+ ++++   +++e+a++ +     P++++ 
  Lus10023621 135 AEYLLAAAERVGDKQFHHAAALLNLCDAMSSKTGNPVQRLGHCFSRALRDRISRdMGRgEVVDNKPNSPPDPHDsmlTTTEFAIQGMERGEMPMFQVP 232
                  5789**************************************************64441455555555555554564555555556677889****** PP

         GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.. 184
                  hl+  qaIle v++++r+H+iD+ i +G +W+aL+q L sR+    +++p   lRiT+v+ ++ + + +++etg+rL++fA+++ +pf+f+++v++  
  Lus10023621 233 HLVGVQAILENVATSNRIHVIDLRIRNGQHWVALIQGLVSRRsdptNPQPveLLRITAVETSTDECSSSIQETGSRLSDFAKAMSIPFRFEIVVMEdn 330
                  ***************************************99977764455558********9999***************************966556 PP

         GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.e 280
                  r++ ++++++ +++ +E+l+V +   l rll    + + e d+v+k++k+++P+v++ ve ea++ns++F  rf+eal +ysa+f+ +e   p+ +  
  Lus10023621 331 RWAGFKPDRFGLNTnEESLVVYSEWGLRRLL----TRPREADRVMKTLKQMKPRVMITVEVEANLNSPNFSGRFVEALFHYSAVFENVECCNPNRDcP 424
                  9************9899*************9....34444578*********************************************998888888* PP

         GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +r ++E ++lg +i+n++a+eg+er  r  + e Wr+ ++++G+++++ se a+ qakl ++k+  ++ y++  + +s+vlg k+ p++ vS W+
  Lus10023621 425 NRETIETVYLGDQISNILATEGDERYLRSVKIEVWRKFFKQFGMEELEPSEAAMHQAKLFMEKYVsEQHYTIGMDGKSMVLGFKTTPMICVSTWK 519
                  ****************************************************************98888*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.165108498IPR005202Transcription factor GRAS
PfamPF035147.2E-82135519IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MDQFSKSTRD FNHVDDDQWL QLQFSPSLPI LDHHEIDGYY SCQRRSNFDL LHKYGFQPVT  60
DSAPPPPQAA PLIEQLEEEE MNEVPLSAEE VVRIAGMRIV QHSSRKAGSP SMLQIPFDPS  120
LSYLSHQDLK NVELAEYLLA AAERVGDKQF HHAAALLNLC DAMSSKTGNP VQRLGHCFSR  180
ALRDRISRDM GRGEVVDNKP NSPPDPHDSM LTTTEFAIQG MERGEMPMFQ VPHLVGVQAI  240
LENVATSNRI HVIDLRIRNG QHWVALIQGL VSRRSDPTNP QPVELLRITA VETSTDECSS  300
SIQETGSRLS DFAKAMSIPF RFEIVVMEDN RWAGFKPDRF GLNTNEESLV VYSEWGLRRL  360
LTRPREADRV MKTLKQMKPR VMITVEVEAN LNSPNFSGRF VEALFHYSAV FENVECCNPN  420
RDCPNRETIE TVYLGDQISN ILATEGDERY LRSVKIEVWR KFFKQFGMEE LEPSEAAMHQ  480
AKLFMEKYVS EQHYTIGMDG KSMVLGFKTT PMICVSTWKF VQLARLASTK RDLRVEFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3115351922375GRAS family transcription factor containing p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.14e-49RGA-like 2